Outputs¶
Expected CSV output¶
| CSV file name | Description |
|---|---|
| ATCG | Contains gene id, GC, GC1, GC2, GC3, GC12, AT, AT3 A3, T3, C3, G3, GRAVY, AROMO and gene length |
| CA_RSCU | Each RSCU result for each codon in each genes |
| CA_RSCUcodons | Correspondence analysis for the first 4 axes of each codon |
| CA_RSCUgenes | Correspondence analysis for the first 4 axis of gene |
| CAI | Gene id and CAI for each gene |
| ENc | Gene id and ENc for each gene |
| P2-index | Gene id and P2 index for each gene |
| optimal codons | Putative optimal codons |
All output plots¶
