Welcome to BCAW tool’s documentation!

Guide

• Introduction to Codon Usage Bias
  • Equations used for codon usage bias analysis
  • References
• Statement of Need
• Usage
  • Automated testing
  • Main Usage
  • Input
  • To obtain FASTA file for a species of interest
• Outputs
  • Expected CSV output
  • All output plots
• Dependencies
• Installation
• More information
• More About Plots
• Contribution Guidelines
• License
• Help

API

• BCAWT package
  • BCAWT.BCAWT module
  • BCAWT.BCAWT_auto_test module
  • BCAWT.ATCG3 module
  • BCAWT.CA module
  • BCAWT.CA_RSCU module
  • BCAWT.GC123 module
  • BCAWT.GRAVY_AROMO module
  • BCAWT.Optimal_codon_corr_method module
  • BCAWT.P2_index module
  • BCAWT.PR2_plot_data module

Indices and tables

• Index
• Module Index
• Search Page